Variant report

Variant	rs56242962
Chromosome Location	chr5:57708991-57708992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57708135..57711120-chr5:57747586..57749744,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035488	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10042036	0.82[EUR][1000 genomes]
rs10070290	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10472048	0.80[EUR][1000 genomes]
rs10472049	0.80[EUR][1000 genomes]
rs10472054	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10472060	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12188948	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.83[EUR][1000 genomes]
rs1508904	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765151	0.83[EUR][1000 genomes]
rs17765997	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1848512	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021394	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2021395	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2047751	0.95[EUR][1000 genomes]
rs28459538	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28475041	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3846534	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59497655	0.82[EUR][1000 genomes]
rs59595416	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60482268	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450473	0.82[EUR][1000 genomes]
rs72758116	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72758120	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758121	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7717376	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9292159	0.82[EUR][1000 genomes]
rs9292160	0.94[EUR][1000 genomes]
rs984147	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57706000-57710000	Weak transcription	Fetal Brain Male	brain
2	chr5:57706400-57709000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:57708000-57709000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:57708200-57710800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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