Variant report

Variant	rs17765997
Chromosome Location	chr5:57708133-57708134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035488	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10042036	0.82[EUR][1000 genomes]
rs10070290	0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10472048	0.80[EUR][1000 genomes]
rs10472049	0.80[EUR][1000 genomes]
rs10472054	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10472060	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12188948	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.83[EUR][1000 genomes]
rs1508904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765151	0.83[EUR][1000 genomes]
rs1848512	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021394	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2021395	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2047751	0.95[EUR][1000 genomes]
rs27937	0.81[YRI][hapmap]
rs28459538	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28475041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3846534	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56242962	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59497655	0.82[EUR][1000 genomes]
rs59595416	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60482268	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450473	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs72758116	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72758120	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758121	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7717376	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9292159	0.82[EUR][1000 genomes]
rs9292160	0.94[EUR][1000 genomes]
rs984147	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57699600-57708200	Enhancers	HMEC	breast
2	chr5:57703800-57708200	Enhancers	A549	lung
3	chr5:57705400-57708200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57705800-57708200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:57706000-57708200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:57706000-57708400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:57706000-57710000	Weak transcription	Fetal Brain Male	brain
8	chr5:57706400-57709000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:57706800-57708200	Enhancers	HSMMtube	muscle
10	chr5:57706800-57708400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:57707200-57708600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:57708000-57708200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr5:57708000-57709000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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