Variant report

Variant	rs1848512
Chromosome Location	chr5:57658981-57658982
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57654875..57656894-chr5:57657997..57659625,2	MCF-7	breast:
2	chr5:57657859..57660556-chr5:57662293..57664197,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10035488	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10042036	0.83[EUR][1000 genomes]
rs10070290	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472048	0.82[EUR][1000 genomes]
rs10472049	0.82[EUR][1000 genomes]
rs10472054	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472060	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12188948	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.84[EUR][1000 genomes]
rs1508904	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765151	0.84[EUR][1000 genomes]
rs17765997	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021394	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021395	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2047751	0.96[EUR][1000 genomes]
rs244699	0.84[AFR][1000 genomes]
rs244701	0.81[AFR][1000 genomes]
rs244702	0.84[AFR][1000 genomes]
rs26977	0.85[AFR][1000 genomes]
rs27937	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs28459538	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28475041	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs378828	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs3846534	1.00[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs40169	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs56242962	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59497655	0.83[EUR][1000 genomes]
rs59595416	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60482268	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6450473	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs72758116	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758120	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72758121	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7717376	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9292159	0.83[EUR][1000 genomes]
rs9292160	0.96[EUR][1000 genomes]
rs984147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3440932	chr5:57656620-57659168	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57657000-57661600	Weak transcription	Fetal Heart	heart
2	chr5:57658800-57662400	Weak transcription	Adipose Nuclei	Adipose

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