Variant report

Variant	rs62366315
Chromosome Location	chr5:57617941-57617942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57611976..57614758-chr5:57615507..57618157,2	MCF-7	breast:
2	chr5:57615984..57618910-chr5:57754343..57756534,2	MCF-7	breast:
3	chr5:57609295..57611170-chr5:57616223..57618224,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12652282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652773	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654923	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657414	1.00[EUR][1000 genomes]
rs2033227	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699921	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59497655	0.91[ASN][1000 genomes]
rs62366336	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366338	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366339	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62366340	1.00[EUR][1000 genomes]
rs62366341	1.00[EUR][1000 genomes]
rs62366342	1.00[EUR][1000 genomes]
rs62366343	1.00[EUR][1000 genomes]
rs62366344	1.00[EUR][1000 genomes]
rs62366346	1.00[EUR][1000 genomes]
rs62366745	0.80[AMR][1000 genomes]
rs62368177	1.00[EUR][1000 genomes]
rs62368200	1.00[EUR][1000 genomes]
rs62368201	1.00[EUR][1000 genomes]
rs62368202	1.00[EUR][1000 genomes]
rs62368204	1.00[EUR][1000 genomes]
rs6450473	0.91[ASN][1000 genomes]
rs7722936	0.91[ASN][1000 genomes]
rs9292159	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57611000-57618400	Weak transcription	HMEC	breast
4	chr5:57611200-57618600	Weak transcription	NHEK	skin
5	chr5:57611800-57618200	Weak transcription	A549	lung
6	chr5:57613200-57618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:57613400-57618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:57614600-57618200	Weak transcription	HSMM	muscle
9	chr5:57614800-57618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:57616400-57620200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:57616600-57619800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:57617400-57618200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:57617400-57618400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:57617400-57618400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:57617400-57619600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:57617600-57618200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:57617600-57619000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:57617600-57619000	Enhancers	HUVEC	blood vessel
19	chr5:57617600-57622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:57617800-57618200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:57617800-57618200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:57617800-57618200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:57617800-57618800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:57617800-57619000	Enhancers	NH-A	brain
25	chr5:57617800-57619200	Enhancers	NHDF-Ad	bronchial
26	chr5:57617800-57619200	Enhancers	Osteobl	bone

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