Variant report

Variant	rs62368204
Chromosome Location	chr5:57704292-57704293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12652282	1.00[EUR][1000 genomes]
rs12652773	1.00[EUR][1000 genomes]
rs12654923	1.00[EUR][1000 genomes]
rs12657414	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2033227	1.00[EUR][1000 genomes]
rs4699921	1.00[EUR][1000 genomes]
rs62366315	1.00[EUR][1000 genomes]
rs62366336	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366338	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366340	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366342	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366343	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366344	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62366346	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62367845	1.00[EUR][1000 genomes]
rs62368177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62368200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62368201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292160	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57699000-57705000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:57699600-57704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57699600-57708200	Enhancers	HMEC	breast
4	chr5:57699800-57704800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57700000-57708000	Enhancers	NHEK	skin
6	chr5:57700400-57704600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:57701000-57705800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:57701400-57706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:57702400-57705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:57702400-57706600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:57702600-57704400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:57702800-57704600	Enhancers	HSMM	muscle
13	chr5:57702800-57705400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:57703000-57704600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr5:57703200-57704400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:57703200-57704400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:57703600-57704400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:57703600-57704600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:57703600-57705800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:57703600-57706800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:57703600-57706800	Weak transcription	Hela-S3	cervix
22	chr5:57703600-57706800	Weak transcription	HSMMtube	muscle
23	chr5:57703800-57706000	Weak transcription	Osteobl	bone
24	chr5:57703800-57706800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:57703800-57708200	Enhancers	A549	lung
26	chr5:57704000-57704400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:57704000-57706000	Weak transcription	NH-A	brain
28	chr5:57704200-57704400	Weak transcription	Esophagus	oesophagus
29	chr5:57704200-57704600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:57704200-57704600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:57704200-57705400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links