Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57629119..57631144-chr5:57754382..57757337,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12652282	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652773	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657414	1.00[EUR][1000 genomes]
rs2033227	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699921	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59497655	0.91[ASN][1000 genomes]
rs62366315	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366336	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366338	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366339	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62366340	1.00[EUR][1000 genomes]
rs62366341	1.00[EUR][1000 genomes]
rs62366342	1.00[EUR][1000 genomes]
rs62366343	1.00[EUR][1000 genomes]
rs62366344	1.00[EUR][1000 genomes]
rs62366346	1.00[EUR][1000 genomes]
rs62368177	1.00[EUR][1000 genomes]
rs62368200	1.00[EUR][1000 genomes]
rs62368201	1.00[EUR][1000 genomes]
rs62368202	1.00[EUR][1000 genomes]
rs62368204	1.00[EUR][1000 genomes]
rs6450473	0.91[ASN][1000 genomes]
rs7722936	0.91[ASN][1000 genomes]
rs9292159	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57627200-57631600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57627200-57634000	Weak transcription	Aorta	Aorta
3	chr5:57629800-57630400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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