Variant report

Variant	rs62366338
Chromosome Location	chr5:57636137-57636138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57635868..57638066-chr5:57754856..57757092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12652282	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12652773	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12654923	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12657414	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033227	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4699921	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59497655	1.00[ASN][1000 genomes]
rs62366315	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62366340	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366341	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366342	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366343	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366344	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366345	1.00[AFR][1000 genomes]
rs62366346	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368177	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368200	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368201	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368202	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6450473	1.00[ASN][1000 genomes]
rs7722936	1.00[ASN][1000 genomes]
rs9292159	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57635600-57637400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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