Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12652282	1.00[EUR][1000 genomes]
rs12652773	1.00[EUR][1000 genomes]
rs12654923	1.00[EUR][1000 genomes]
rs12657414	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033227	1.00[EUR][1000 genomes]
rs2047751	0.98[ASN][1000 genomes]
rs4699921	1.00[EUR][1000 genomes]
rs62366315	1.00[EUR][1000 genomes]
rs62366336	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366338	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366339	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366343	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62368177	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368200	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368201	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368202	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62368204	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292160	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57649400-57655000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57649600-57650400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57649600-57650800	Enhancers	Adipose Nuclei	Adipose
4	chr5:57649800-57650400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:57649800-57650400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:57649800-57651000	Enhancers	Brain Germinal Matrix	brain
7	chr5:57649800-57651000	Enhancers	Placenta	Placenta
8	chr5:57649800-57651200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:57650000-57650400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr5:57650200-57655600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:57650200-57655800	Weak transcription	H1 Cell Line	embryonic stem cell

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