Variant report

Variant	rs62368202
Chromosome Location	chr5:57701908-57701909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12652282	1.00[EUR][1000 genomes]
rs12652773	1.00[EUR][1000 genomes]
rs12654923	1.00[EUR][1000 genomes]
rs12657414	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2033227	1.00[EUR][1000 genomes]
rs2047751	0.81[ASN][1000 genomes]
rs4699921	1.00[EUR][1000 genomes]
rs62366315	1.00[EUR][1000 genomes]
rs62366336	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366338	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366340	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62366341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62366342	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62366343	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62366344	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62366346	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62368177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62368200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62368201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292160	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57699000-57705000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:57699600-57704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57699600-57708200	Enhancers	HMEC	breast
4	chr5:57699800-57704800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57700000-57708000	Enhancers	NHEK	skin
6	chr5:57700400-57704600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:57700600-57702600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:57700600-57703000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:57700600-57703600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:57700600-57703600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:57700600-57703600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:57700800-57702000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:57700800-57702400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:57701000-57703600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr5:57701000-57705800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:57701200-57702200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:57701200-57703600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:57701400-57702000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:57701400-57702200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:57701400-57706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:57701600-57702400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:57701600-57702800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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