Variant report

Variant	rs7275597
Chromosome Location	chr21:16567922-16567923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2823127	1.00[EUR][1000 genomes]
rs56172552	1.00[EUR][1000 genomes]
rs56314547	1.00[EUR][1000 genomes]
rs57332347	0.90[AFR][1000 genomes]
rs60363981	0.90[AFR][1000 genomes]
rs7279936	1.00[EUR][1000 genomes]
rs73891935	1.00[EUR][1000 genomes]
rs9975362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9976439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16556600-16568000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:16564800-16569400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr21:16564800-16569400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr21:16565000-16571000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr21:16565800-16573400	Enhancers	HepG2	liver
6	chr21:16566800-16571800	Weak transcription	K562	blood
7	chr21:16567200-16568400	Enhancers	Liver	Liver
8	chr21:16567600-16568800	Enhancers	Fetal Intestine Small	intestine
9	chr21:16567800-16568600	Enhancers	Small Intestine	intestine
10	chr21:16567800-16568800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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