Variant report

Variant	rs57332347
Chromosome Location	chr21:16571252-16571253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16570442..16572661-chr21:16665803..16668621,2	MCF-7	breast:
2	chr21:16549985..16551510-chr21:16570529..16573382,2	MCF-7	breast:
3	chr21:16506016..16509076-chr21:16569179..16572213,3	MCF-7	breast:
4	chr21:16570410..16572952-chr21:16744868..16746614,2	MCF-7	breast:
5	chr21:16570464..16574427-chr21:16815066..16817993,4	MCF-7	breast:
6	chr21:16564425..16567335-chr21:16570458..16574314,5	MCF-7	breast:
7	chr21:16429926..16439498-chr21:16561851..16585948,113	MCF-7	breast:
8	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
9	chr21:16569254..16574166-chr21:16662821..16666093,6	MCF-7	breast:
10	chr21:16473730..16476676-chr21:16570598..16572953,2	MCF-7	breast:
11	chr21:16543823..16545720-chr21:16570709..16572635,2	MCF-7	breast:
12	chr21:16239516..16243603-chr21:16570212..16573471,3	MCF-7	breast:
13	chr21:16492929..16496497-chr21:16570239..16574662,7	MCF-7	breast:
14	chr21:16569632..16571997-chr9:114245370..114247044,2	MCF-7	breast:
15	chr21:16235013..16237732-chr21:16570965..16574658,5	MCF-7	breast:
16	chr21:16570806..16572373-chr21:16663419..16665582,2	MCF-7	breast:
17	chr21:16467730..16470164-chr21:16570752..16572573,2	MCF-7	breast:
18	chr21:16571135..16572773-chr21:16640417..16643289,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28521150	1.00[AMR][1000 genomes]
rs60363981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7275597	0.90[AFR][1000 genomes]
rs9975362	0.87[AFR][1000 genomes]
rs9983242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16565800-16573400	Enhancers	HepG2	liver
2	chr21:16566800-16571800	Weak transcription	K562	blood
3	chr21:16568400-16571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr21:16568400-16571800	Weak transcription	Fetal Kidney	kidney
5	chr21:16569400-16572400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr21:16569600-16571600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr21:16569800-16573600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr21:16570200-16573200	Enhancers	Fetal Heart	heart
9	chr21:16570600-16571800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr21:16570800-16571800	Weak transcription	Adipose Nuclei	Adipose
11	chr21:16570800-16572200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr21:16570800-16572200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr21:16570800-16572600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr21:16571000-16572200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr21:16571000-16572200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr21:16571000-16572400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr21:16571000-16572400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr21:16571000-16572600	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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