Variant report

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:16568438..16570001-chr21:16571756..16574334,2	MCF-7	breast:
2	chr21:16549985..16551510-chr21:16570529..16573382,2	MCF-7	breast:
3	chr21:16571579..16572982-chr21:16958893..16959825,7	MCF-7	breast:
4	chr21:16571618..16573167-chr21:16582264..16583152,8	MCF-7	breast:
5	chr21:16571625..16572981-chr21:16582195..16583291,25	MCF-7	breast:
6	chr21:16570464..16574427-chr21:16815066..16817993,4	MCF-7	breast:
7	chr21:16253394..16255024-chr21:16571558..16573354,2	MCF-7	breast:
8	chr21:16564425..16567335-chr21:16570458..16574314,5	MCF-7	breast:
9	chr21:16571818..16572996-chr21:16582415..16583526,5	MCF-7	breast:
10	chr21:16429926..16439498-chr21:16561851..16585948,113	MCF-7	breast:
11	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
12	chr21:16569254..16574166-chr21:16662821..16666093,6	MCF-7	breast:
13	chr21:16571538..16572982-chr21:16582327..16583133,7	MCF-7	breast:
14	chr21:16239516..16243603-chr21:16570212..16573471,3	MCF-7	breast:
15	chr21:16492929..16496497-chr21:16570239..16574662,7	MCF-7	breast:
16	chr21:16235013..16237732-chr21:16570965..16574658,5	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9983242	APRT	trans	lymphoblastoid	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16565800-16573400	Enhancers	HepG2	liver
2	chr21:16569800-16573600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr21:16570200-16573200	Enhancers	Fetal Heart	heart
4	chr21:16571600-16573000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr21:16571600-16573000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr21:16571600-16573200	Enhancers	A549	lung
7	chr21:16571800-16573000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr21:16571800-16573200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr21:16571800-16573200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr21:16571800-16576600	Weak transcription	Right Atrium	heart
11	chr21:16572000-16573200	Active TSS	Fetal Muscle Leg	muscle
12	chr21:16572000-16576000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr21:16572000-16576400	Weak transcription	Left Ventricle	heart
14	chr21:16572200-16576000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:16572200-16576400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr21:16572200-16576400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr21:16572400-16575400	Weak transcription	Fetal Kidney	kidney
18	chr21:16572400-16576200	Weak transcription	K562	blood
19	chr21:16572400-16576400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr21:16572400-16576400	Weak transcription	Adipose Nuclei	Adipose

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