Variant report

Variant	rs72756389
Chromosome Location	chr9:98531474-98531475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98530888..98533284-chr9:98539147..98541445,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4743291	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4743315	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55878548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62558997	1.00[AFR][1000 genomes]
rs62558998	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62559000	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62559001	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62559003	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98527000-98532200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:98527600-98531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:98527600-98532600	Weak transcription	Ovary	ovary
4	chr9:98527600-98533000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:98527600-98533800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:98527800-98532400	Weak transcription	Fetal Stomach	stomach
7	chr9:98528000-98532000	Weak transcription	HepG2	liver
8	chr9:98528000-98533200	Weak transcription	Fetal Intestine Large	intestine
9	chr9:98528000-98533600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:98528200-98532400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:98529200-98532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98529600-98531800	Weak transcription	Fetal Lung	lung
13	chr9:98529600-98532200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:98529600-98532400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:98529600-98532400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:98529800-98532000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:98529800-98533800	Weak transcription	Brain Anterior Caudate	brain
18	chr9:98529800-98534000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:98530200-98533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:98531400-98533000	Weak transcription	Colonic Mucosa	Colon

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