Variant report

Variant	rs72761916
Chromosome Location	chr15:93399599-93399600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12592393	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56281617	1.00[EUR][1000 genomes]
rs7168131	0.97[EUR][1000 genomes]
rs72761917	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93396800-93412400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93397600-93399600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:93398800-93399600	Enhancers	Fetal Kidney	kidney
4	chr15:93398800-93400800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr15:93399000-93399600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:93399000-93399600	Enhancers	Fetal Intestine Large	intestine
7	chr15:93399000-93399800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:93399000-93399800	Enhancers	Fetal Intestine Small	intestine
9	chr15:93399000-93399800	Enhancers	NHEK	skin
10	chr15:93399000-93400200	Enhancers	A549	lung
11	chr15:93399200-93399600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:93399200-93399600	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr15:93399400-93399600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:93399400-93399600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr15:93399400-93400400	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links