Variant report

Variant	rs7168131
Chromosome Location	chr15:93414541-93414542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93410852..93415965-chr15:93422830..93429141,8	K562	blood:
2	chr15:93372869..93375694-chr15:93412741..93415071,2	MCF-7	breast:
3	chr15:93397765..93404838-chr15:93410272..93414991,6	MCF-7	breast:
4	chr15:93360728..93362505-chr15:93412571..93415555,2	MCF-7	breast:
5	chr15:93413461..93416683-chr15:93420184..93421907,3	K562	blood:
6	chr15:93362859..93367460-chr15:93410831..93415229,10	MCF-7	breast:
7	chr15:93361853..93370156-chr15:93409891..93415394,15	MCF-7	breast:
8	chr15:93411880..93416683-chr15:93418729..93427514,10	K562	blood:
9	chr15:93351239..93355096-chr15:93409806..93415420,10	MCF-7	breast:
10	chr15:93413469..93415304-chr15:93448158..93450085,2	K562	blood:
11	chr15:93350501..93355702-chr15:93411636..93415920,12	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000264123	Chromatin interaction
ENSG00000173575	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12592393	0.93[EUR][1000 genomes]
rs36053120	0.82[AMR][1000 genomes]
rs56281617	0.97[EUR][1000 genomes]
rs57874062	0.82[AMR][1000 genomes]
rs66669635	0.82[AMR][1000 genomes]
rs7175377	0.82[AMR][1000 genomes]
rs72761916	0.97[EUR][1000 genomes]
rs72761917	0.97[EUR][1000 genomes]
rs72761930	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93412600-93425000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:93413600-93416200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:93413600-93421800	Weak transcription	Gastric	stomach
4	chr15:93413600-93421800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:93413600-93425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:93413800-93415200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:93413800-93419400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:93413800-93421600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:93413800-93421600	Weak transcription	Pancreas	Pancrea
10	chr15:93413800-93421600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:93413800-93425200	Weak transcription	Left Ventricle	heart
12	chr15:93414000-93415400	Enhancers	Hela-S3	cervix
13	chr15:93414000-93415800	Weak transcription	Placenta	Placenta
14	chr15:93414000-93424200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:93414200-93419400	Weak transcription	A549	lung
16	chr15:93414400-93419400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links