Variant report

Variant	rs57874062
Chromosome Location	chr15:93431975-93431976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
2	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
3	chr15:93180406..93183251-chr15:93430441..93434489,3	MCF-7	breast:
4	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
5	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258922	Chromatin interaction
ENSG00000258527	Chromatin interaction
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs36053120	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66669635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168131	0.82[AMR][1000 genomes]
rs72761922	1.00[EUR][1000 genomes]
rs72761930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027599	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	esv1851305	chr15:93429646-93446869	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93426800-93432200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:93427200-93433000	Weak transcription	Spleen	Spleen
3	chr15:93427200-93433600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:93427200-93433600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:93427200-93433800	Weak transcription	Gastric	stomach
6	chr15:93427200-93434000	Weak transcription	Lung	lung
7	chr15:93427200-93437800	Weak transcription	Esophagus	oesophagus
8	chr15:93427800-93435400	Weak transcription	Small Intestine	intestine
9	chr15:93427800-93435600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
10	chr15:93428000-93433800	Weak transcription	Left Ventricle	heart
11	chr15:93428000-93434600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:93428400-93432600	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr15:93428400-93433400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
14	chr15:93428400-93434000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:93428400-93435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:93428600-93437000	Weak transcription	Colonic Mucosa	Colon
17	chr15:93428600-93443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:93428800-93432400	Enhancers	Fetal Heart	heart
19	chr15:93428800-93432400	Weak transcription	Fetal Stomach	stomach
20	chr15:93428800-93432800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:93428800-93435600	Weak transcription	Ovary	ovary
22	chr15:93428800-93437800	Weak transcription	Right Ventricle	heart
23	chr15:93429000-93432200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:93429000-93433400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
25	chr15:93429000-93437000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:93429200-93432400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:93429200-93432400	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:93429200-93433200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:93429200-93434800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:93429200-93435600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:93429400-93432000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:93429400-93432200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:93429400-93433600	Strong transcription	Fetal Thymus	thymus
34	chr15:93429400-93433800	Strong transcription	Placenta	Placenta
35	chr15:93429400-93434600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
36	chr15:93429400-93442400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:93429600-93438600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:93429600-93439200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:93429600-93441800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr15:93429800-93432200	Genic enhancers	Fetal Lung	lung
41	chr15:93429800-93434000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:93430000-93432000	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
43	chr15:93430400-93432000	Transcr. at gene 5' and 3'	HMEC	breast
44	chr15:93430400-93442000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:93430600-93438000	Strong transcription	HSMMtube	muscle
46	chr15:93430800-93432000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:93430800-93432000	Genic enhancers	Duodenum Smooth Muscle	Duodenum
48	chr15:93430800-93432200	Enhancers	Brain Angular Gyrus	brain
49	chr15:93430800-93432200	Genic enhancers	Brain Hippocampus Middle	brain
50	chr15:93430800-93432400	Weak transcription	Fetal Intestine Small	intestine

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