Variant report

Variant	rs8027599
Chromosome Location	chr15:93433515-93433516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93373770..93376434-chr15:93432824..93435125,2	MCF-7	breast:
2	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
3	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
4	chr15:93180406..93183251-chr15:93430441..93434489,3	MCF-7	breast:
5	chr11:62622719..62625101-chr15:93432769..93434852,2	MCF-7	breast:
6	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
7	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction
ENSG00000168003	Chromatin interaction
ENSG00000258527	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000258922	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs36053120	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57874062	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs66669635	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72761922	0.94[EUR][1000 genomes]
rs72761930	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
6	nsv1047496	chr15:93412778-93475878	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1036560	chr15:93413594-93462163	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
8	esv1851305	chr15:93429646-93446869	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93427200-93433600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:93427200-93433600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:93427200-93433800	Weak transcription	Gastric	stomach
4	chr15:93427200-93434000	Weak transcription	Lung	lung
5	chr15:93427200-93437800	Weak transcription	Esophagus	oesophagus
6	chr15:93427800-93435400	Weak transcription	Small Intestine	intestine
7	chr15:93427800-93435600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
8	chr15:93428000-93433800	Weak transcription	Left Ventricle	heart
9	chr15:93428000-93434600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:93428400-93434000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:93428400-93435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:93428600-93437000	Weak transcription	Colonic Mucosa	Colon
13	chr15:93428600-93443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:93428800-93435600	Weak transcription	Ovary	ovary
15	chr15:93428800-93437800	Weak transcription	Right Ventricle	heart
16	chr15:93429000-93437000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:93429200-93434800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:93429200-93435600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:93429400-93433600	Strong transcription	Fetal Thymus	thymus
20	chr15:93429400-93433800	Strong transcription	Placenta	Placenta
21	chr15:93429400-93434600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
22	chr15:93429400-93442400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:93429600-93438600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:93429600-93439200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:93429600-93441800	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr15:93429800-93434000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:93430400-93442000	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:93430600-93438000	Strong transcription	HSMMtube	muscle
29	chr15:93430800-93434000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:93430800-93434800	Weak transcription	Stomach Mucosa	stomach
31	chr15:93430800-93437600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:93430800-93437800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:93430800-93440600	Weak transcription	Aorta	Aorta
34	chr15:93430800-93442200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:93430800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:93430800-93443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:93431000-93434600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:93431000-93438000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:93431000-93438600	Strong transcription	K562	blood
40	chr15:93431000-93442400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:93431200-93434600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:93431400-93434400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:93431600-93434200	Strong transcription	Liver	Liver
44	chr15:93431600-93434400	Weak transcription	Psoas Muscle	Psoas
45	chr15:93431600-93438000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr15:93431600-93442200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr15:93431600-93442800	Strong transcription	NHDF-Ad	bronchial
48	chr15:93431600-93443000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:93431800-93434200	Weak transcription	Adipose Nuclei	Adipose
50	chr15:93431800-93434200	Weak transcription	Brain Cingulate Gyrus	brain

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