Variant report

Variant	rs72764143
Chromosome Location	chr5:54289706-54289707
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2112940	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762223	1.00[ASN][1000 genomes]
rs72762225	1.00[ASN][1000 genomes]
rs72762245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830301	chr5:54225874-54423505	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54282800-54290400	Enhancers	HUVEC	blood vessel
2	chr5:54286400-54289800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:54286400-54290000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr5:54286400-54290800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:54286400-54290800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:54286400-54291000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:54286400-54300000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:54286800-54290600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:54287400-54292400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:54287600-54292000	Weak transcription	HSMMtube	muscle
11	chr5:54287600-54292000	Weak transcription	NH-A	brain
12	chr5:54287600-54292000	Weak transcription	Osteobl	bone
13	chr5:54287600-54302600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:54287800-54293000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:54287800-54299400	Weak transcription	NHLF	lung
16	chr5:54288000-54292000	Weak transcription	NHDF-Ad	bronchial
17	chr5:54288000-54292200	Weak transcription	HSMM	muscle
18	chr5:54289000-54290000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:54289000-54290000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:54289000-54290000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:54289000-54290200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:54289200-54289800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr5:54289200-54290000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:54289200-54290000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr5:54289200-54290000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr5:54289200-54290200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:54289200-54290200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:54289200-54290200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:54289400-54289800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:54289400-54290000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr5:54289400-54293600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:54289600-54290000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr5:54289600-54290000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:54289600-54290200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:54289600-54292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:54289600-54292200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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