Variant report

Variant	rs72762223
Chromosome Location	chr5:54200299-54200300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1867688	1.00[ASN][1000 genomes]
rs2112940	1.00[ASN][1000 genomes]
rs56020939	1.00[ASN][1000 genomes]
rs72757433	1.00[ASN][1000 genomes]
rs72757436	1.00[ASN][1000 genomes]
rs72757442	1.00[ASN][1000 genomes]
rs72762225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72762245	1.00[ASN][1000 genomes]
rs72764143	1.00[ASN][1000 genomes]
rs7714829	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54196600-54200600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:54196600-54201800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:54196600-54201800	Enhancers	HSMMtube	muscle
4	chr5:54196600-54202000	Enhancers	HSMM	muscle
5	chr5:54196800-54200600	Enhancers	Thymus	Thymus
6	chr5:54197400-54205200	Weak transcription	NH-A	brain
7	chr5:54197600-54201600	Weak transcription	HUVEC	blood vessel
8	chr5:54197600-54202200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:54197800-54200600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:54197800-54201800	Enhancers	NHDF-Ad	bronchial
11	chr5:54197800-54203600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:54198000-54202600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:54199000-54201600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:54199200-54201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:54199400-54201600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:54199400-54201800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:54199600-54200400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:54199800-54200600	Enhancers	Osteobl	bone
19	chr5:54200000-54202400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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