The 2.0 version of rSNPBase

Variant report

Variant rs1867688
Chromosome Location chr5:54049279-54049280
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:54040600-54050000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr5:54040600-54052400 Weak transcription Brain Hippocampus Middle brain
3 chr5:54041200-54051800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr5:54041800-54052000 Weak transcription Placenta Placenta
5 chr5:54041800-54052200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr5:54042600-54053800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr5:54044800-54051800 Weak transcription K562 blood
8 chr5:54044800-54056000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr5:54047600-54049600 Enhancers Primary B cells from cord blood blood
10 chr5:54047600-54049600 Enhancers Primary Natural Killer cells fromperipheralblood blood
11 chr5:54048600-54049400 Enhancers Primary monocytes fromperipheralblood blood
12 chr5:54048600-54049400 Flanking Active TSS Primary B cells from peripheral blood blood
13 chr5:54048600-54049400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr5:54048600-54049400 Enhancers Primary T helper 17 cells PMA-I stimulated --
15 chr5:54048600-54049400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr5:54048600-54049400 Enhancers HSMM muscle
17 chr5:54048600-54049400 Enhancers HSMMtube muscle
18 chr5:54048600-54049400 Enhancers Osteobl bone
19 chr5:54048600-54049600 Enhancers Primary T cells fromperipheralblood blood
20 chr5:54048600-54049600 Enhancers Primary hematopoietic stem cells short term culture blood
21 chr5:54048600-54049600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr5:54048600-54049600 Enhancers NHDF-Ad bronchial
23 chr5:54048600-54050000 Flanking Active TSS GM12878-XiMat blood
24 chr5:54048600-54051000 Enhancers NH-A brain
25 chr5:54048600-54054600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
26 chr5:54048800-54049400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr5:54048800-54049400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr5:54048800-54049400 Active TSS Rectal Mucosa Donor 29 rectum
29 chr5:54048800-54050000 Enhancers NHLF lung
30 chr5:54049000-54049400 Enhancers Left Ventricle heart
31 chr5:54049000-54050200 Weak transcription Primary hematopoietic stem cells blood
32 chr5:54049000-54050800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr5:54049000-54051800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr5:54049000-54053600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr5:54049000-54056200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr5:54049200-54049400 Enhancers Aorta Aorta
37 chr5:54049200-54049400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
38 chr5:54049200-54051000 Weak transcription Esophagus oesophagus
39 chr5:54049200-54051800 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr5:54049200-54052000 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr5:54049200-54052200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr5:54049200-54052600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr5:54049200-54056200 Weak transcription Muscle Satellite Cultured Cells --
44 chr5:54049200-54057000 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015