Variant report

Variant	rs72757433
Chromosome Location	chr5:54046633-54046634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1867688	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56020939	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146444	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6869164	0.82[EUR][1000 genomes]
rs72757436	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72757442	1.00[ASN][1000 genomes]
rs72762223	1.00[ASN][1000 genomes]
rs72762225	1.00[ASN][1000 genomes]
rs72762245	1.00[ASN][1000 genomes]
rs7714829	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54040600-54047400	Weak transcription	Right Atrium	heart
2	chr5:54040600-54050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:54040600-54052400	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:54041200-54051800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:54041400-54046800	Weak transcription	Primary B cells from cord blood	blood
6	chr5:54041400-54048600	Weak transcription	HSMMtube	muscle
7	chr5:54041600-54048800	Weak transcription	NHLF	lung
8	chr5:54041800-54048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:54041800-54048800	Weak transcription	Fetal Heart	heart
10	chr5:54041800-54052000	Weak transcription	Placenta	Placenta
11	chr5:54041800-54052200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:54042000-54047400	Weak transcription	NHDF-Ad	bronchial
13	chr5:54042600-54053800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:54044800-54046800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:54044800-54051800	Weak transcription	K562	blood
16	chr5:54044800-54056000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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