Variant report

Variant	rs72764708
Chromosome Location	chr5:44358810-44358811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17228283	0.81[EUR][1000 genomes]
rs17234268	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17250784	0.81[EUR][1000 genomes]
rs56107445	0.81[EUR][1000 genomes]
rs6893398	0.86[AMR][1000 genomes]
rs72763164	0.81[EUR][1000 genomes]
rs72763176	0.81[EUR][1000 genomes]
rs72763179	0.83[EUR][1000 genomes]
rs72763180	0.83[EUR][1000 genomes]
rs72763181	0.83[EUR][1000 genomes]
rs72763190	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72763193	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72763201	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969955	chr5:44357198-44360877	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44355800-44359400	Enhancers	Fetal Stomach	stomach
2	chr5:44356000-44362800	Enhancers	Fetal Lung	lung
3	chr5:44356400-44361400	Weak transcription	Ovary	ovary
4	chr5:44356800-44361600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:44357400-44360400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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