Variant report

Variant	rs6893398
Chromosome Location	chr5:44376222-44376223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16901892	1.00[CHD][hapmap]
rs17234541	0.87[CEU][hapmap];1.00[CHD][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs72764708	0.86[AMR][1000 genomes]
rs7718704	1.00[CHD][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs7727520	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6893398	PLCXD3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44360800-44378000	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:44372400-44383200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:44373200-44376600	Weak transcription	Fetal Stomach	stomach
4	chr5:44374000-44377000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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