Variant report

Variant	rs7718704
Chromosome Location	chr5:44392977-44392978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16901892	1.00[CHD][hapmap]
rs17234541	1.00[CHD][hapmap]
rs6893398	1.00[CHD][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs7727520	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44390800-44393400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:44391600-44393400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:44392200-44395200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:44392800-44393000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:44392800-44393000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:44392800-44393000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:44392800-44394600	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links