Variant report

Variant	rs72764721
Chromosome Location	chr9:118435754-118435755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55806800	1.00[AMR][1000 genomes]
rs72757309	1.00[AMR][1000 genomes]
rs72763144	1.00[AMR][1000 genomes]
rs72764723	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118429200-118436600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:118432400-118436200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:118432400-118436600	Enhancers	NHEK	skin
4	chr9:118432600-118436600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:118433600-118436600	Enhancers	HMEC	breast
6	chr9:118434000-118436200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr9:118434000-118436600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:118434400-118436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:118434600-118435800	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:118434600-118437200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr9:118434800-118435800	Flanking Active TSS	Hela-S3	cervix
12	chr9:118434800-118435800	Flanking Active TSS	Osteobl	bone
13	chr9:118434800-118436200	Enhancers	Aorta	Aorta
14	chr9:118434800-118436200	Flanking Active TSS	NHDF-Ad	bronchial
15	chr9:118434800-118436400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:118435000-118435800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:118435000-118436000	Enhancers	Fetal Kidney	kidney
18	chr9:118435000-118436200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:118435200-118435800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:118435200-118435800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:118435200-118435800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:118435200-118435800	Enhancers	Colon Smooth Muscle	Colon
23	chr9:118435400-118435800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:118435400-118436400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:118435400-118436400	Enhancers	HSMMtube	muscle
26	chr9:118435600-118435800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:118435600-118435800	Flanking Active TSS	HSMM	muscle
28	chr9:118435600-118435800	Flanking Active TSS	NHLF	lung
29	chr9:118435600-118436000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:118435600-118436000	Flanking Active TSS	NH-A	brain
31	chr9:118435600-118436400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:118435600-118436400	Flanking Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links