Variant report

Variant	rs72765961
Chromosome Location	chr5:58558603-58558604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10036406	0.90[ASN][1000 genomes]
rs10038599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10055446	0.87[ASN][1000 genomes]
rs10061600	0.83[ASN][1000 genomes]
rs10061786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064893	0.87[ASN][1000 genomes]
rs10068836	0.98[ASN][1000 genomes]
rs10070294	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070436	0.87[ASN][1000 genomes]
rs10075364	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740402	0.98[ASN][1000 genomes]
rs11747413	0.87[ASN][1000 genomes]
rs13328160	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13328175	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13328226	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13360907	0.98[ASN][1000 genomes]
rs17444059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17528257	0.98[ASN][1000 genomes]
rs17528285	0.87[ASN][1000 genomes]
rs17528473	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17528634	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2112959	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28529077	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647633	0.98[ASN][1000 genomes]
rs60453299	0.98[ASN][1000 genomes]
rs61683381	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6881054	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72765932	0.87[ASN][1000 genomes]
rs72765942	0.98[ASN][1000 genomes]
rs72765953	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72765990	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9292201	0.88[EUR][1000 genomes]
rs9686434	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58541600-58560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:58552600-58560400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:58553400-58560000	Weak transcription	Fetal Lung	lung
6	chr5:58553800-58568600	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:58554200-58559600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:58554200-58561000	Weak transcription	Stomach Mucosa	stomach
9	chr5:58554200-58562600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr5:58557000-58559200	Weak transcription	Hela-S3	cervix
11	chr5:58557200-58560000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:58557200-58560600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:58557200-58562400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:58557400-58560600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:58558000-58558800	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:58558000-58560600	Weak transcription	Fetal Intestine Large	intestine
17	chr5:58558000-58561000	Weak transcription	Fetal Intestine Small	intestine
18	chr5:58558200-58559000	Transcr. at gene 5' and 3'	A549	lung
19	chr5:58558400-58559200	Enhancers	Aorta	Aorta
20	chr5:58558400-58559200	Enhancers	Left Ventricle	heart
21	chr5:58558400-58559200	Enhancers	Pancreas	Pancrea
22	chr5:58558400-58559200	Enhancers	Psoas Muscle	Psoas
23	chr5:58558400-58559200	Enhancers	Right Atrium	heart
24	chr5:58558400-58564400	Enhancers	Fetal Heart	heart
25	chr5:58558600-58559800	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:58558600-58559800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:58558600-58560600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:58558600-58561000	Weak transcription	Rectal Mucosa Donor 31	rectum

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