Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10038599	0.88[EUR][1000 genomes]
rs10061786	0.88[EUR][1000 genomes]
rs10070294	0.91[EUR][1000 genomes]
rs10075364	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13328160	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13328175	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328226	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17444059	0.88[EUR][1000 genomes]
rs17528473	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17528634	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17780213	1.00[ASN][1000 genomes]
rs2044419	1.00[ASN][1000 genomes]
rs2112959	0.88[EUR][1000 genomes]
rs28529077	0.88[EUR][1000 genomes]
rs56183128	1.00[ASN][1000 genomes]
rs57516309	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61683381	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881054	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72765953	0.88[EUR][1000 genomes]
rs72765961	0.88[EUR][1000 genomes]
rs72765990	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72765993	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72767710	1.00[ASN][1000 genomes]
rs9292201	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58573400-58583400	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:58574200-58590200	Weak transcription	Right Atrium	heart
3	chr5:58581400-58583200	Enhancers	A549	lung
4	chr5:58582400-58587000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58582800-58583200	Enhancers	Hela-S3	cervix
6	chr5:58582800-58583600	Enhancers	Psoas Muscle	Psoas
7	chr5:58582800-58583800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:58582800-58584000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr5:58582800-58584200	Enhancers	HUVEC	blood vessel
10	chr5:58583000-58583400	Enhancers	Lung	lung
11	chr5:58583000-58583600	Enhancers	Left Ventricle	heart
12	chr5:58583000-58583600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:58583000-58583600	Enhancers	Spleen	Spleen
14	chr5:58583000-58583800	Enhancers	Right Ventricle	heart
15	chr5:58583000-58584000	Enhancers	Gastric	stomach
16	chr5:58583000-58584000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:58583000-58584000	Enhancers	Rectal Smooth Muscle	rectum
18	chr5:58583000-58584000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr5:58583000-58584200	Enhancers	Fetal Heart	heart
20	chr5:58583000-58584800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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