Variant report

Variant	rs72774050
Chromosome Location	chr10:5728137-5728138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5486978..5493668-chr10:5725151..5730020,10	MCF-7	breast:
2	chr10:5673035..5675364-chr10:5725053..5728516,4	MCF-7	breast:
3	chr10:5586412..5588997-chr10:5727556..5730290,2	MCF-7	breast:
4	chr10:5727488..5729665-chr10:5929692..5932614,2	MCF-7	breast:
5	chr10:5727747..5730181-chr10:5782433..5784785,2	K562	blood:
6	chr10:5725239..5729489-chr10:5854026..5858186,8	K562	blood:
7	chr10:5725582..5728827-chr10:5752793..5758658,6	MCF-7	breast:
8	chr10:5487977..5491757-chr10:5726753..5729135,3	MCF-7	breast:
9	chr10:5727335..5729854-chr10:5777449..5779108,2	K562	blood:
10	chr10:5724077..5727016-chr10:5727404..5730062,2	K562	blood:
11	chr10:5726952..5729225-chr10:5806393..5808626,2	MCF-7	breast:
12	chr10:4911567..4913119-chr10:5727909..5730757,2	K562	blood:
13	chr10:5725704..5728346-chr3:33480193..33482855,3	MCF-7	breast:
14	chr10:5706894..5712025-chr10:5724987..5728504,7	MCF-7	breast:
15	chr10:5725559..5728313-chr10:5930802..5933492,3	K562	blood:
16	chr10:5726410..5728417-chr10:5738015..5741917,3	MCF-7	breast:
17	chr10:5724274..5728540-chr10:5734829..5741563,8	MCF-7	breast:
18	chr10:5725503..5729426-chr10:5853777..5860412,5	MCF-7	breast:
19	chr10:5725427..5729550-chr10:5853446..5856157,4	MCF-7	breast:
20	chr10:5726920..5728949-chr10:5933520..5936437,2	K562	blood:
21	chr10:5726775..5729176-chr10:5734287..5736106,2	MCF-7	breast:
22	chr10:5696053..5698803-chr10:5727232..5729360,2	K562	blood:
23	chr10:5487869..5490146-chr10:5727753..5729878,2	K562	blood:
24	chr10:5704788..5710194-chr10:5724908..5728833,8	K562	blood:
25	chr10:5725094..5729377-chr10:5927689..5933777,6	MCF-7	breast:
26	chr10:5488619..5490146-chr10:5727561..5729878,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108021	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000134461	Chromatin interaction
ENSG00000196372	Chromatin interaction
ENSG00000226647	Chromatin interaction
ENSG00000153560	Chromatin interaction
ENSG00000240577	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2386621	0.83[AMR][1000 genomes]
rs2669142	1.00[EUR][1000 genomes]
rs41290259	1.00[EUR][1000 genomes]
rs55804524	0.92[EUR][1000 genomes]
rs56254903	1.00[EUR][1000 genomes]
rs60525381	0.82[EUR][1000 genomes]
rs7073359	0.92[EUR][1000 genomes]
rs7076354	0.82[EUR][1000 genomes]
rs72772332	0.91[EUR][1000 genomes]
rs72772333	0.91[EUR][1000 genomes]
rs72772338	1.00[EUR][1000 genomes]
rs72772346	0.82[EUR][1000 genomes]
rs72772350	0.82[EUR][1000 genomes]
rs72772365	0.82[EUR][1000 genomes]
rs72772367	0.82[EUR][1000 genomes]
rs72772373	0.82[EUR][1000 genomes]
rs72772377	0.82[EUR][1000 genomes]
rs72772378	0.82[EUR][1000 genomes]
rs72772401	0.82[EUR][1000 genomes]
rs72774053	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774058	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774062	1.00[EUR][1000 genomes]
rs72774076	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72774079	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915532	0.82[EUR][1000 genomes]
rs7921582	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv549895	chr10:5712310-5735648	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5726000-5728600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:5726000-5728800	Active TSS	A549	lung
3	chr10:5726200-5728200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:5726200-5728200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:5726200-5728200	Active TSS	Aorta	Aorta
6	chr10:5726200-5728200	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr10:5726200-5728200	Active TSS	Esophagus	oesophagus
8	chr10:5726200-5728200	Active TSS	Fetal Muscle Trunk	muscle
9	chr10:5726200-5728200	Active TSS	Gastric	stomach
10	chr10:5726200-5728200	Active TSS	Left Ventricle	heart
11	chr10:5726200-5728200	Active TSS	Ovary	ovary
12	chr10:5726200-5728400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:5726200-5728400	Active TSS	Colonic Mucosa	Colon
14	chr10:5726200-5728400	Active TSS	Stomach Smooth Muscle	stomach
15	chr10:5726200-5728400	Active TSS	HSMM	muscle
16	chr10:5726200-5728600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr10:5726200-5728600	Active TSS	Psoas Muscle	Psoas
18	chr10:5726200-5728600	Active TSS	Right Atrium	heart
19	chr10:5726200-5728800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:5726400-5728200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr10:5726400-5728200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:5726400-5728200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:5726400-5728200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:5726400-5728200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:5726400-5728200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:5726400-5728200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr10:5726400-5728200	Active TSS	Lung	lung
28	chr10:5726400-5728200	Active TSS	Pancreas	Pancrea
29	chr10:5726400-5728400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr10:5726400-5728400	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr10:5726400-5728400	Active TSS	Fetal Intestine Large	intestine
32	chr10:5726400-5728400	Active TSS	Fetal Intestine Small	intestine
33	chr10:5726400-5728400	Active TSS	Hela-S3	cervix
34	chr10:5726400-5728400	Active TSS	HSMMtube	muscle
35	chr10:5726400-5728600	Active TSS	H1 Cell Line	embryonic stem cell
36	chr10:5726400-5728600	Active TSS	Thymus	Thymus
37	chr10:5726600-5728200	Active TSS	H9 Cell Line	embryonic stem cell
38	chr10:5726600-5728200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:5726600-5728200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:5726600-5728200	Active TSS	NHEK	skin
41	chr10:5726600-5728400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr10:5726600-5728400	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr10:5726600-5728400	Active TSS	Placenta	Placenta
44	chr10:5726600-5728400	Active TSS	NHDF-Ad	bronchial
45	chr10:5726600-5728600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:5726600-5728600	Active TSS	NHLF	lung
47	chr10:5726600-5728800	Active TSS	HMEC	breast
48	chr10:5726600-5729000	Active TSS	K562	blood
49	chr10:5726600-5730400	Active TSS	GM12878-XiMat	blood
50	chr10:5727200-5728400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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