Variant report

Variant	rs7915532
Chromosome Location	chr10:5842919-5842920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5839916..5843685-chr10:5848628..5853676,5	K562	blood:
2	chr10:5831602..5838072-chr10:5842540..5850784,8	MCF-7	breast:
3	chr10:5833873..5836597-chr10:5841720..5845063,3	K562	blood:
4	chr10:5841217..5844033-chr10:5931893..5934848,2	K562	blood:
5	chr10:5841980..5844348-chr10:5846040..5847807,2	MCF-7	breast:
6	chr10:5832056..5836941-chr10:5839805..5845063,7	K562	blood:
7	chr10:5842019..5844066-chr10:5854494..5856804,2	K562	blood:
8	chr10:5841031..5843716-chr10:5843918..5845552,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2669142	0.82[EUR][1000 genomes]
rs41290259	0.82[EUR][1000 genomes]
rs55982328	0.82[EUR][1000 genomes]
rs56254903	0.82[EUR][1000 genomes]
rs60525381	1.00[EUR][1000 genomes]
rs7076064	0.92[EUR][1000 genomes]
rs7076354	1.00[EUR][1000 genomes]
rs72772338	0.82[EUR][1000 genomes]
rs72772339	0.82[EUR][1000 genomes]
rs72772346	1.00[EUR][1000 genomes]
rs72772350	1.00[EUR][1000 genomes]
rs72772365	1.00[EUR][1000 genomes]
rs72772367	1.00[EUR][1000 genomes]
rs72772373	1.00[EUR][1000 genomes]
rs72772377	1.00[EUR][1000 genomes]
rs72772378	1.00[EUR][1000 genomes]
rs72772401	1.00[EUR][1000 genomes]
rs72774050	0.82[EUR][1000 genomes]
rs72774053	0.82[EUR][1000 genomes]
rs72774058	0.82[EUR][1000 genomes]
rs72774062	0.82[EUR][1000 genomes]
rs72774079	0.82[EUR][1000 genomes]
rs7921582	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv515935	chr10:5820394-5869839	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv549896	chr10:5820394-5880066	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5762600-5843400	Strong transcription	Dnd41	blood
2	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:5797400-5847400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:5798200-5843000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:5805000-5843200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:5818000-5854200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:5819600-5844000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:5820400-5843000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:5820400-5843000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:5822000-5843800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr10:5822200-5843400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:5823800-5843400	Strong transcription	Thymus	Thymus
14	chr10:5824000-5843400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:5824200-5843400	Strong transcription	Fetal Intestine Large	intestine
16	chr10:5824600-5843400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:5826400-5844400	Strong transcription	Fetal Intestine Small	intestine
18	chr10:5826400-5844400	Strong transcription	Fetal Stomach	stomach
19	chr10:5826600-5843400	Strong transcription	Primary B cells from cord blood	blood
20	chr10:5826800-5844400	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:5827400-5843000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:5827600-5843800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:5827800-5848800	Weak transcription	Stomach Mucosa	stomach
24	chr10:5827800-5851200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:5828200-5843000	Weak transcription	Right Atrium	heart
26	chr10:5828800-5847000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:5830400-5844000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:5830600-5843000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:5831600-5844000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:5832000-5848000	Weak transcription	Fetal Heart	heart
31	chr10:5834600-5853600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:5834800-5843800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:5834800-5845200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:5837800-5847000	Weak transcription	Psoas Muscle	Psoas
35	chr10:5837800-5854200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:5838000-5851400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:5838600-5845200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:5838600-5851200	Weak transcription	Brain Angular Gyrus	brain
39	chr10:5838600-5851400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:5838800-5847400	Weak transcription	Hela-S3	cervix
41	chr10:5838800-5848800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:5838800-5849400	Weak transcription	Brain Substantia Nigra	brain
43	chr10:5838800-5851600	Weak transcription	Fetal Brain Male	brain
44	chr10:5840200-5843000	Strong transcription	Pancreas	Pancrea
45	chr10:5840200-5843400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:5840600-5851800	Weak transcription	Colonic Mucosa	Colon
47	chr10:5840800-5846200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:5840800-5851600	Weak transcription	Fetal Kidney	kidney
49	chr10:5841200-5844600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:5841400-5851400	Weak transcription	Aorta	Aorta

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