Variant report

Variant	rs72776967
Chromosome Location	chr10:5190013-5190014
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5149764..5151896-chr10:5189814..5192281,2	MCF-7	breast:
2	chr10:5189042..5190566-chr10:5324451..5326870,2	MCF-7	breast:
3	chr10:5166174..5167900-chr10:5189108..5191670,2	MCF-7	breast:

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs11252962	1.00[ASN][1000 genomes]
rs11252963	1.00[ASN][1000 genomes]
rs11252964	1.00[ASN][1000 genomes]
rs11252965	1.00[ASN][1000 genomes]
rs11252967	1.00[ASN][1000 genomes]
rs11252969	1.00[ASN][1000 genomes]
rs11252971	1.00[ASN][1000 genomes]
rs11252973	1.00[ASN][1000 genomes]
rs11252974	1.00[ASN][1000 genomes]
rs11252977	1.00[ASN][1000 genomes]
rs11252979	1.00[ASN][1000 genomes]
rs11252982	1.00[ASN][1000 genomes]
rs11252983	1.00[ASN][1000 genomes]
rs11252984	1.00[ASN][1000 genomes]
rs11252986	1.00[ASN][1000 genomes]
rs11252987	1.00[ASN][1000 genomes]
rs11252988	1.00[ASN][1000 genomes]
rs11252989	1.00[ASN][1000 genomes]
rs11252990	1.00[ASN][1000 genomes]
rs11252991	1.00[ASN][1000 genomes]
rs11252993	1.00[ASN][1000 genomes]
rs11252994	1.00[ASN][1000 genomes]
rs11252995	1.00[ASN][1000 genomes]
rs11252996	1.00[ASN][1000 genomes]
rs11252998	1.00[ASN][1000 genomes]
rs11252999	1.00[ASN][1000 genomes]
rs11253000	1.00[ASN][1000 genomes]
rs11253001	1.00[ASN][1000 genomes]
rs11253002	1.00[ASN][1000 genomes]
rs11253003	1.00[ASN][1000 genomes]
rs11253004	1.00[ASN][1000 genomes]
rs11253005	1.00[ASN][1000 genomes]
rs11253046	1.00[ASN][1000 genomes]
rs11492958	1.00[ASN][1000 genomes]
rs11517339	1.00[ASN][1000 genomes]
rs11517340	1.00[ASN][1000 genomes]
rs11517342	1.00[ASN][1000 genomes]
rs11522542	1.00[ASN][1000 genomes]
rs11524372	1.00[ASN][1000 genomes]
rs11813521	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776280	1.00[ASN][1000 genomes]
rs1413622	1.00[ASN][1000 genomes]
rs1937875	1.00[ASN][1000 genomes]
rs1937876	1.00[ASN][1000 genomes]
rs1937877	1.00[ASN][1000 genomes]
rs1937902	1.00[ASN][1000 genomes]
rs1937911	1.00[ASN][1000 genomes]
rs1937912	1.00[ASN][1000 genomes]
rs1937914	1.00[ASN][1000 genomes]
rs1937915	1.00[ASN][1000 genomes]
rs1937918	1.00[ASN][1000 genomes]
rs2398198	1.00[ASN][1000 genomes]
rs2398199	1.00[ASN][1000 genomes]
rs2398200	1.00[ASN][1000 genomes]
rs2398201	1.00[ASN][1000 genomes]
rs2398204	1.00[ASN][1000 genomes]
rs2398205	1.00[ASN][1000 genomes]
rs2398206	1.00[ASN][1000 genomes]
rs28942669	0.90[EUR][1000 genomes]
rs2895063	1.00[ASN][1000 genomes]
rs34074567	1.00[ASN][1000 genomes]
rs34140485	0.90[EUR][1000 genomes]
rs34142252	1.00[ASN][1000 genomes]
rs34320249	0.83[EUR][1000 genomes]
rs4427472	1.00[ASN][1000 genomes]
rs4525120	1.00[ASN][1000 genomes]
rs4547003	1.00[ASN][1000 genomes]
rs4565809	1.00[ASN][1000 genomes]
rs55783052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55791971	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55888910	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56067592	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329244	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56357054	0.90[EUR][1000 genomes]
rs57097292	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601911	1.00[ASN][1000 genomes]
rs6601912	1.00[ASN][1000 genomes]
rs6601913	1.00[ASN][1000 genomes]
rs6601914	1.00[ASN][1000 genomes]
rs66712885	0.90[EUR][1000 genomes]
rs7081702	1.00[ASN][1000 genomes]
rs7086693	1.00[ASN][1000 genomes]
rs7089684	1.00[ASN][1000 genomes]
rs7091644	1.00[ASN][1000 genomes]
rs7099915	1.00[ASN][1000 genomes]
rs7100514	1.00[ASN][1000 genomes]
rs72772199	0.90[EUR][1000 genomes]
rs72772200	0.90[EUR][1000 genomes]
rs72774006	0.90[EUR][1000 genomes]
rs72774008	0.90[EUR][1000 genomes]
rs72774009	0.90[EUR][1000 genomes]
rs72774012	0.90[EUR][1000 genomes]
rs72774014	0.90[EUR][1000 genomes]
rs72774015	0.81[EUR][1000 genomes]
rs72774016	0.90[EUR][1000 genomes]
rs72774020	0.90[EUR][1000 genomes]
rs72774027	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72774028	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72776937	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72776938	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776942	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776945	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776949	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776951	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776953	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776955	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776957	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776958	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776961	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776963	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776968	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776979	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776984	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776985	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776986	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776987	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896234	1.00[ASN][1000 genomes]
rs7899887	1.00[ASN][1000 genomes]
rs7910445	1.00[ASN][1000 genomes]
rs7910451	1.00[ASN][1000 genomes]
rs7913871	1.00[ASN][1000 genomes]
rs7913986	1.00[ASN][1000 genomes]
rs7917637	1.00[ASN][1000 genomes]
rs7920831	1.00[ASN][1000 genomes]
rs7924169	1.00[ASN][1000 genomes]
rs9423382	1.00[ASN][1000 genomes]
rs9423384	1.00[ASN][1000 genomes]
rs9423392	1.00[ASN][1000 genomes]
rs9423396	1.00[ASN][1000 genomes]
rs9423559	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv549882	chr10:4943518-5203864	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv2763913	chr10:4961021-5321407	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1039386	chr10:5008383-5348491	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1036566	chr10:5037926-5261426	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv549883	chr10:5037926-5275762	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv1047484	chr10:5076258-5261482	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv1042487	chr10:5090313-5196900	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv540463	chr10:5090313-5196900	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv540464	chr10:5108345-5196815	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv540465	chr10:5108345-5261482	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv540466	chr10:5114577-5196815	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv540467	chr10:5114577-5225365	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv540468	chr10:5114577-5261482	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv540469	chr10:5120774-5225365	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv540470	chr10:5120774-5261482	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv540471	chr10:5133561-5261482	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv540472	chr10:5133561-5284334	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
29	nsv1048081	chr10:5149144-5321395	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5188800-5191200	Enhancers	Fetal Intestine Small	intestine
2	chr10:5189000-5191200	Enhancers	Fetal Intestine Large	intestine
3	chr10:5189200-5190200	Enhancers	Colonic Mucosa	Colon
4	chr10:5189200-5190400	Enhancers	Small Intestine	intestine
5	chr10:5189200-5190400	Enhancers	Stomach Mucosa	stomach
6	chr10:5189200-5190600	Enhancers	Pancreas	Pancrea
7	chr10:5189200-5190600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr10:5189200-5191800	Flanking Active TSS	A549	lung
9	chr10:5189400-5191800	Enhancers	Hela-S3	cervix
10	chr10:5189800-5190200	Flanking Active TSS	Liver	Liver
11	chr10:5189800-5190200	Enhancers	Gastric	stomach
12	chr10:5189800-5190200	Flanking Bivalent TSS/Enh	HepG2	liver
13	chr10:5189800-5190400	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr10:5189800-5190400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr10:5190000-5191600	Enhancers	Rectal Mucosa Donor 31	rectum

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