Variant report

Variant	rs72780532
Chromosome Location	chr10:4313481-4313482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:
2	chr10:3825089..3830045-chr10:4313155..4317076,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2065092	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56254661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72778418	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4301600-4316000	Weak transcription	Gastric	stomach
2	chr10:4307800-4321400	Weak transcription	Pancreas	Pancrea
3	chr10:4309600-4323000	Weak transcription	Lung	lung
4	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:4310000-4320800	Weak transcription	Fetal Heart	heart
6	chr10:4312200-4313800	Enhancers	HSMMtube	muscle
7	chr10:4312200-4314000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:4312200-4314200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4312200-4314200	Enhancers	NHDF-Ad	bronchial
10	chr10:4312400-4313600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:4312400-4313600	Enhancers	Fetal Lung	lung
12	chr10:4312400-4313600	Enhancers	Fetal Muscle Leg	muscle
13	chr10:4312400-4313800	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:4312400-4314000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:4312600-4315800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:4312800-4313800	Weak transcription	Adipose Nuclei	Adipose
17	chr10:4312800-4321600	Weak transcription	NHLF	lung
18	chr10:4313000-4313800	Enhancers	Colon Smooth Muscle	Colon
19	chr10:4313000-4314000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:4313000-4322600	Weak transcription	HMEC	breast
21	chr10:4313200-4314000	Enhancers	Fetal Brain Male	brain
22	chr10:4313400-4313600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:4313400-4313600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:4313400-4313600	Enhancers	Placenta	Placenta
25	chr10:4313400-4313600	Enhancers	Ovary	ovary
26	chr10:4313400-4314200	Enhancers	Aorta	Aorta

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