Variant report

Variant	rs72786237
Chromosome Location	chr5:119802773-119802774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:119799517..119802046-chr5:119802691..119805555,4	MCF-7	breast:
2	chr5:119802488..119804867-chr5:119844244..119845883,2	K562	blood:
3	chr5:119801561..119803830-chr5:119805628..119808715,3	K562	blood:

Variant related genes	Relation type
ENSG00000184838	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1432462	1.00[ASN][1000 genomes]
rs1432463	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503928	1.00[ASN][1000 genomes]
rs1503929	1.00[ASN][1000 genomes]
rs17146628	0.86[ASN][1000 genomes]
rs17146632	1.00[ASN][1000 genomes]
rs17424128	0.87[ASN][1000 genomes]
rs17489517	0.86[ASN][1000 genomes]
rs17489671	1.00[ASN][1000 genomes]
rs17489720	1.00[ASN][1000 genomes]
rs17490270	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895255	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56398366	0.86[ASN][1000 genomes]
rs57401201	1.00[ASN][1000 genomes]
rs58699148	0.86[ASN][1000 genomes]
rs58831848	1.00[ASN][1000 genomes]
rs60249515	1.00[ASN][1000 genomes]
rs61113370	1.00[ASN][1000 genomes]
rs72786224	0.86[ASN][1000 genomes]
rs72786225	0.86[ASN][1000 genomes]
rs72786226	1.00[ASN][1000 genomes]
rs72786229	1.00[ASN][1000 genomes]
rs72786241	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786243	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7730105	1.00[ASN][1000 genomes]
rs7734475	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119798800-119802800	Active TSS	Aorta	Aorta
2	chr5:119799000-119803600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:119799200-119803000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:119799400-119803000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:119799600-119803000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:119799800-119802800	Active TSS	HSMM	muscle
7	chr5:119799800-119802800	Active TSS	NHLF	lung
8	chr5:119799800-119803600	Active TSS	K562	blood
9	chr5:119801000-119802800	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr5:119801200-119802800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:119801600-119804000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:119801800-119809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:119802200-119803000	Enhancers	Fetal Heart	heart
14	chr5:119802400-119802800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:119802400-119802800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr5:119802400-119803400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:119802400-119809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:119802600-119802800	Bivalent Enhancer	Fetal Lung	lung
19	chr5:119802600-119802800	Flanking Active TSS	NHDF-Ad	bronchial
20	chr5:119802600-119802800	Flanking Active TSS	Osteobl	bone
21	chr5:119802600-119804200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:119802600-119808000	Weak transcription	HSMMtube	muscle
23	chr5:119802600-119808000	Weak transcription	NH-A	brain

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