Variant report

Variant	rs72786241
Chromosome Location	chr5:119804755-119804756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1432463	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17490270	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4895255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786237	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786243	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72786248	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119801800-119809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:119802400-119809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:119802600-119808000	Weak transcription	HSMMtube	muscle
4	chr5:119802600-119808000	Weak transcription	NH-A	brain
5	chr5:119802800-119804800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:119802800-119807400	Weak transcription	NHLF	lung
7	chr5:119802800-119809600	Weak transcription	Aorta	Aorta
8	chr5:119803000-119811800	Weak transcription	Fetal Heart	heart
9	chr5:119803400-119804800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr5:119803800-119807600	Weak transcription	HSMM	muscle
11	chr5:119803800-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:119804000-119806400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:119804200-119804800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:119804200-119806800	Weak transcription	Osteobl	bone
15	chr5:119804400-119805000	Weak transcription	K562	blood
16	chr5:119804400-119807400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:119804400-119812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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