The 2.0 version of rSNPBase

Variant report

Variant rs72790589
Chromosome Location chr5:108388952-108388953
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108350800-108390400 Weak transcription HSMMtube muscle
2 chr5:108356000-108399000 Weak transcription HSMM muscle
3 chr5:108356400-108389200 Weak transcription Primary B cells from cord blood blood
4 chr5:108360400-108389000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:108360400-108389400 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr5:108360400-108389600 Weak transcription Brain Angular Gyrus brain
7 chr5:108360400-108389800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr5:108360400-108389800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr5:108360400-108400400 Weak transcription NHEK skin
10 chr5:108360400-108404800 Weak transcription Colon Smooth Muscle Colon
11 chr5:108360400-108425200 Weak transcription Aorta Aorta
12 chr5:108365600-108389400 Weak transcription HepG2 liver
13 chr5:108372600-108389800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr5:108374800-108390000 Weak transcription Muscle Satellite Cultured Cells --
15 chr5:108376000-108390000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:108376400-108389000 Weak transcription Primary T cells from cord blood blood
17 chr5:108376400-108392600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr5:108377000-108399000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr5:108377400-108389000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr5:108380000-108389200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr5:108380000-108391200 Weak transcription Primary hematopoietic stem cells blood
22 chr5:108380400-108389000 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr5:108381000-108389400 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr5:108381400-108389800 Weak transcription Brain Cingulate Gyrus brain
25 chr5:108382000-108389800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr5:108382400-108389000 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr5:108383600-108389600 Weak transcription H9 Cell Line embryonic stem cell
28 chr5:108386200-108389000 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr5:108386200-108389800 Weak transcription Osteobl bone
30 chr5:108386200-108390000 Weak transcription NHDF-Ad bronchial
31 chr5:108386200-108390400 Weak transcription Fetal Intestine Large intestine
32 chr5:108386400-108390000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr5:108386600-108389000 Weak transcription Brain Hippocampus Middle brain
34 chr5:108387000-108389200 Weak transcription Placenta Amnion Placenta Amnion
35 chr5:108387400-108389600 Weak transcription GM12878-XiMat blood
36 chr5:108387600-108389600 Weak transcription Fetal Brain Female brain
37 chr5:108387600-108395200 Weak transcription Fetal Stomach stomach
38 chr5:108387800-108394800 Weak transcription Left Ventricle heart
39 chr5:108388000-108389600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr5:108388000-108389600 Weak transcription Right Ventricle heart
41 chr5:108388000-108390400 Weak transcription Fetal Lung lung
42 chr5:108388000-108396600 Weak transcription Adipose Nuclei Adipose
43 chr5:108388000-108401200 Weak transcription Gastric stomach
44 chr5:108388200-108389600 Weak transcription Liver Liver
45 chr5:108388200-108389800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr5:108388200-108389800 Weak transcription Brain Inferior Temporal Lobe brain
47 chr5:108388200-108389800 Weak transcription Stomach Smooth Muscle stomach
48 chr5:108388200-108390200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr5:108388200-108390400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr5:108388200-108391200 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015