Variant report

Variant	rs72792515
Chromosome Location	chr5:108403801-108403802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10043235	1.00[ASN][1000 genomes]
rs10477433	1.00[ASN][1000 genomes]
rs28874995	1.00[ASN][1000 genomes]
rs72790534	1.00[ASN][1000 genomes]
rs72790588	1.00[ASN][1000 genomes]
rs72790589	1.00[ASN][1000 genomes]
rs72790590	1.00[ASN][1000 genomes]
rs72790592	1.00[AFR][1000 genomes]
rs72790594	1.00[AFR][1000 genomes]
rs72790596	1.00[AFR][1000 genomes]
rs72792503	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72792505	1.00[ASN][1000 genomes]
rs72792514	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72792517	0.81[AMR][1000 genomes]
rs72796550	0.81[AMR][1000 genomes]
rs72796552	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9885519	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108360400-108404800	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:108360400-108425200	Weak transcription	Aorta	Aorta
3	chr5:108388800-108412000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links