Variant report

Variant	rs72796567
Chromosome Location	chr5:108435899-108435900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108432296..108433865-chr5:108435051..108437891,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs57781150	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57863249	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6861826	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861979	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796561	0.89[AFR][1000 genomes]
rs72796564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796575	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72796580	0.80[AFR][1000 genomes]
rs72796581	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796600	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72798561	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72798563	0.89[AMR][1000 genomes]
rs72798564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72798569	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72798570	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72798571	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72798572	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7704839	0.89[AMR][1000 genomes]
rs7708766	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7709487	0.84[AFR][1000 genomes]
rs7728903	0.82[AFR][1000 genomes]
rs7736207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:108416400-108441200	Weak transcription	HSMM	muscle
3	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
4	chr5:108426000-108441400	Weak transcription	Aorta	Aorta
5	chr5:108427400-108441200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108427400-108441400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108433400-108441400	Weak transcription	Fetal Heart	heart
8	chr5:108435000-108436400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:108435200-108437800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:108435200-108437800	Weak transcription	NHDF-Ad	bronchial
11	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood

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