Variant report

Variant	rs7704839
Chromosome Location	chr5:108464714-108464715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17163944	0.82[CEU][hapmap]
rs57781150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57863249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59672639	0.87[AFR][1000 genomes]
rs6861826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861979	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883750	1.00[YRI][hapmap]
rs72796557	0.89[AMR][1000 genomes]
rs72796564	0.89[AMR][1000 genomes]
rs72796565	0.89[AMR][1000 genomes]
rs72796567	0.89[AMR][1000 genomes]
rs72796572	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72796578	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72796584	0.89[AMR][1000 genomes]
rs72796586	0.89[AMR][1000 genomes]
rs72796591	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72798561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72798563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72798564	0.89[AMR][1000 genomes]
rs72798569	0.89[AMR][1000 genomes]
rs72798570	0.89[AMR][1000 genomes]
rs72798571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72798572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701332	0.82[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7704875	1.00[YRI][hapmap]
rs7708766	0.89[AMR][1000 genomes]
rs7713591	1.00[ASW][hapmap];0.82[CEU][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7736207	0.82[CEU][hapmap];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv4953	chr5:108443905-108488747	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:108456800-108472800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:108462800-108468400	Weak transcription	Fetal Heart	heart
4	chr5:108463800-108468200	Weak transcription	Aorta	Aorta

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