Variant report

Variant	rs17163944
Chromosome Location	chr5:108443656-108443657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6861979	1.00[CEU][hapmap]
rs6883750	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs72796555	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72796561	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72796570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796572	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796578	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796587	1.00[EUR][1000 genomes]
rs72796591	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7701171	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7701332	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7704839	0.82[CEU][hapmap]
rs7704875	1.00[YRI][hapmap]
rs7713591	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736207	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
2	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:108441400-108445400	Enhancers	Fetal Heart	heart
4	chr5:108441600-108447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:108441600-108455600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108441800-108455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108442000-108445000	Weak transcription	Brain Anterior Caudate	brain
8	chr5:108442000-108446800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:108442200-108444200	Enhancers	HUVEC	blood vessel
11	chr5:108442400-108449000	Weak transcription	Pancreas	Pancrea
12	chr5:108442600-108444200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:108442800-108445200	Weak transcription	Osteobl	bone
14	chr5:108442800-108446000	Weak transcription	HSMM	muscle
15	chr5:108442800-108455600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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