Variant report

Variant	rs72796591
Chromosome Location	chr5:108473638-108473639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17163944	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57781150	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57863249	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59672639	0.81[AFR][1000 genomes]
rs6861826	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6861979	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796555	0.80[EUR][1000 genomes]
rs72796561	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72796570	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796573	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796580	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796581	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72796587	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796592	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72796600	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72798561	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72798563	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72798571	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72798572	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7701171	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7701332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7704839	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7713591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv4953	chr5:108443905-108488747	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:108468400-108478600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:108468600-108477000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
5	chr5:108469200-108475200	Weak transcription	Primary T cells from cord blood	blood
6	chr5:108469600-108478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:108470000-108497000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:108470400-108482200	Weak transcription	HSMM	muscle
9	chr5:108470600-108477200	Weak transcription	Ovary	ovary
10	chr5:108472800-108473800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:108473200-108477200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links