Variant report

Variant	rs72796814
Chromosome Location	chr2:32116414-32116415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32114289..32116844-chr2:32132031..32134456,2	K562	blood:
2	chr2:32107622..32110787-chr2:32114422..32117702,3	K562	blood:
3	chr2:32114828..32117093-chr2:32118242..32120077,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55730032	1.00[AFR][1000 genomes]
rs56156729	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62142444	1.00[AFR][1000 genomes]
rs72796805	0.95[EUR][1000 genomes]
rs72796828	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	esv1801791	chr2:32077901-32120807	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32057200-32117200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:32064600-32142400	Weak transcription	NHDF-Ad	bronchial
4	chr2:32065400-32123000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:32068000-32121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:32068400-32121400	Weak transcription	Fetal Brain Female	brain
7	chr2:32069000-32116600	Weak transcription	Osteobl	bone
8	chr2:32074600-32127000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:32075800-32170000	Weak transcription	Aorta	Aorta
10	chr2:32086200-32127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:32086600-32174400	Weak transcription	NHLF	lung
12	chr2:32088000-32157600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:32088200-32127600	Weak transcription	K562	blood
14	chr2:32089400-32160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr2:32090000-32116600	Weak transcription	NH-A	brain
16	chr2:32093000-32122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:32099600-32193000	Weak transcription	Hela-S3	cervix
18	chr2:32100800-32147800	Weak transcription	Spleen	Spleen
19	chr2:32101200-32123600	Weak transcription	HUVEC	blood vessel
20	chr2:32101600-32127000	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:32103200-32133600	Weak transcription	Brain Germinal Matrix	brain
22	chr2:32103600-32125800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:32104600-32123600	Weak transcription	Fetal Kidney	kidney
24	chr2:32104600-32131600	Weak transcription	Fetal Heart	heart
25	chr2:32105000-32127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr2:32105400-32146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:32107200-32123600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:32107200-32123600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr2:32107200-32126600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:32107200-32126600	Weak transcription	Lung	lung
31	chr2:32107200-32127000	Weak transcription	Ovary	ovary
32	chr2:32107200-32167600	Weak transcription	Left Ventricle	heart
33	chr2:32107400-32118200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:32107400-32119600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr2:32107400-32122400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:32107400-32123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:32107400-32123600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:32107400-32125400	Weak transcription	Thymus	Thymus
39	chr2:32107400-32126200	Weak transcription	Fetal Intestine Small	intestine
40	chr2:32107400-32126600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:32107400-32126600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:32107400-32131800	Weak transcription	Colon Smooth Muscle	Colon
43	chr2:32108800-32119600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:32109600-32123600	Weak transcription	A549	lung
45	chr2:32112200-32125400	Weak transcription	Primary T cells from cord blood	blood
46	chr2:32112400-32129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:32113000-32116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr2:32114000-32118200	Weak transcription	Fetal Lung	lung
49	chr2:32114000-32120400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr2:32114200-32122200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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