Variant report
| Variant | rs72797226 |
|---|---|
| Chromosome Location | chr5:151974836-151974837 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:54)
| rs_ID | r2[population] |
|---|---|
| rs10155517 | 0.95[ASN][1000 genomes] |
| rs10515675 | 0.91[ASN][1000 genomes] |
| rs10515676 | 0.91[ASN][1000 genomes] |
| rs11167584 | 0.87[ASN][1000 genomes] |
| rs11956651 | 0.91[ASN][1000 genomes] |
| rs13359939 | 1.00[ASN][1000 genomes] |
| rs13361438 | 0.91[ASN][1000 genomes] |
| rs17452991 | 0.95[ASN][1000 genomes] |
| rs17453740 | 1.00[ASN][1000 genomes] |
| rs17453775 | 1.00[ASN][1000 genomes] |
| rs17454420 | 1.00[ASN][1000 genomes] |
| rs17550343 | 1.00[ASN][1000 genomes] |
| rs17565365 | 1.00[ASN][1000 genomes] |
| rs2961756 | 0.95[ASN][1000 genomes] |
| rs2961760 | 0.95[ASN][1000 genomes] |
| rs2961765 | 0.95[ASN][1000 genomes] |
| rs2961766 | 0.90[ASN][1000 genomes] |
| rs2964230 | 0.95[ASN][1000 genomes] |
| rs2964231 | 0.95[ASN][1000 genomes] |
| rs3923209 | 0.95[ASN][1000 genomes] |
| rs4246033 | 1.00[ASN][1000 genomes] |
| rs4398624 | 0.91[ASN][1000 genomes] |
| rs4406125 | 0.91[ASN][1000 genomes] |
| rs4478308 | 0.95[ASN][1000 genomes] |
| rs4484412 | 0.91[ASN][1000 genomes] |
| rs4580766 | 0.95[ASN][1000 genomes] |
| rs4958316 | 0.95[ASN][1000 genomes] |
| rs4958317 | 0.95[ASN][1000 genomes] |
| rs4958320 | 1.00[ASN][1000 genomes] |
| rs4958323 | 1.00[ASN][1000 genomes] |
| rs4958560 | 0.95[ASN][1000 genomes] |
| rs4958561 | 0.95[ASN][1000 genomes] |
| rs4958564 | 1.00[ASN][1000 genomes] |
| rs4958566 | 0.91[ASN][1000 genomes] |
| rs4958567 | 0.83[ASN][1000 genomes] |
| rs4958568 | 0.91[ASN][1000 genomes] |
| rs4958569 | 0.91[ASN][1000 genomes] |
| rs56014830 | 1.00[ASN][1000 genomes] |
| rs67979431 | 0.86[ASN][1000 genomes] |
| rs6871699 | 0.91[ASN][1000 genomes] |
| rs6876403 | 0.83[ASN][1000 genomes] |
| rs6876723 | 0.95[ASN][1000 genomes] |
| rs6884556 | 0.91[ASN][1000 genomes] |
| rs6895969 | 0.91[ASN][1000 genomes] |
| rs72795376 | 0.95[ASN][1000 genomes] |
| rs72795379 | 0.95[ASN][1000 genomes] |
| rs72797233 | 1.00[ASN][1000 genomes] |
| rs72797237 | 1.00[ASN][1000 genomes] |
| rs72797241 | 1.00[ASN][1000 genomes] |
| rs72797243 | 1.00[ASN][1000 genomes] |
| rs72797254 | 0.95[ASN][1000 genomes] |
| rs72797296 | 1.00[ASN][1000 genomes] |
| rs72799113 | 1.00[ASN][1000 genomes] |
| rs9324734 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1145899 | chr5:151974833-151974839 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151974600-151975400 | Enhancers | Fetal Brain Male | brain |
| 2 | chr5:151974600-151976800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 3 | chr5:151974800-151975400 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 4 | chr5:151974800-151975600 | Enhancers | Brain Germinal Matrix | brain |
