The 2.0 version of rSNPBase

Variant report

Variant rs72799283
Chromosome Location chr2:54200294-54200295
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54198600-54209000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:54198600-54212000 Weak transcription Spleen Spleen
3 chr2:54198800-54202600 Weak transcription Lung lung
4 chr2:54198800-54204200 Weak transcription Esophagus oesophagus
5 chr2:54198800-54205800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr2:54199000-54200400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
7 chr2:54199000-54200600 Enhancers Primary T killer naive cells fromperipheralblood blood
8 chr2:54199000-54201000 Weak transcription Placenta Placenta
9 chr2:54199000-54201200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr2:54199000-54203200 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr2:54199000-54203400 Weak transcription Left Ventricle heart
12 chr2:54199000-54203400 Weak transcription Placenta Amnion Placenta Amnion
13 chr2:54199000-54204200 Weak transcription Thymus Thymus
14 chr2:54199000-54207200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr2:54199000-54208600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
17 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr2:54199000-54228800 Weak transcription Aorta Aorta
21 chr2:54199200-54200400 Enhancers Primary T helper naive cells fromperipheralblood blood
22 chr2:54199200-54200400 Enhancers Primary T helper cells PMA-I stimulated --
23 chr2:54199200-54200400 Enhancers Dnd41 blood
24 chr2:54199200-54200800 Weak transcription Fetal Stomach stomach
25 chr2:54199200-54200800 Enhancers K562 blood
26 chr2:54199200-54201000 Weak transcription NHEK skin
27 chr2:54199200-54201200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:54199200-54201200 Weak transcription Ovary ovary
29 chr2:54199200-54201400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr2:54199200-54201400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr2:54199200-54201400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr2:54199200-54201400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr2:54199200-54201400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr2:54199200-54201400 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr2:54199200-54201400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:54199200-54201400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr2:54199200-54201400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr2:54199200-54201400 Weak transcription Adipose Nuclei Adipose
39 chr2:54199200-54201400 Weak transcription Liver Liver
40 chr2:54199200-54201400 Weak transcription Brain Angular Gyrus brain
41 chr2:54199200-54201400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr2:54199200-54201400 Weak transcription Fetal Lung lung
43 chr2:54199200-54201400 Weak transcription Fetal Thymus thymus
44 chr2:54199200-54201400 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr2:54199200-54201400 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr2:54199200-54201400 Weak transcription Osteobl bone
47 chr2:54199200-54201600 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr2:54199200-54201800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr2:54199200-54201800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr2:54199200-54202000 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015