Variant report

Variant	rs72800752
Chromosome Location	chr2:54350931-54350932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54341216..54345253-chr2:54347980..54351307,5	MCF-7	breast:
2	chr2:54343136..54344762-chr2:54350422..54352755,2	K562	blood:
3	chr2:54340543..54343083-chr2:54350579..54352338,2	K562	blood:

Variant related genes	Relation type
ENSG00000170634	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10166363	1.00[ASN][1000 genomes]
rs10169648	1.00[ASN][1000 genomes]
rs10172916	1.00[ASN][1000 genomes]
rs10176342	1.00[ASN][1000 genomes]
rs10176406	1.00[ASN][1000 genomes]
rs10192403	1.00[ASN][1000 genomes]
rs10205315	1.00[ASN][1000 genomes]
rs10208690	1.00[ASN][1000 genomes]
rs11675345	1.00[ASN][1000 genomes]
rs11676433	1.00[ASN][1000 genomes]
rs11677951	1.00[ASN][1000 genomes]
rs11687470	1.00[ASN][1000 genomes]
rs11688581	1.00[ASN][1000 genomes]
rs11695936	1.00[ASN][1000 genomes]
rs13418039	1.00[ASN][1000 genomes]
rs13418658	1.00[ASN][1000 genomes]
rs13418839	1.00[ASN][1000 genomes]
rs1559039	1.00[ASN][1000 genomes]
rs1559040	1.00[ASN][1000 genomes]
rs17189638	1.00[ASN][1000 genomes]
rs2112125	1.00[ASN][1000 genomes]
rs28368466	1.00[ASN][1000 genomes]
rs28416116	1.00[ASN][1000 genomes]
rs35641543	1.00[ASN][1000 genomes]
rs55666400	1.00[ASN][1000 genomes]
rs55672362	1.00[ASN][1000 genomes]
rs55820614	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56374740	1.00[ASN][1000 genomes]
rs61572658	1.00[ASN][1000 genomes]
rs6721034	1.00[ASN][1000 genomes]
rs67951010	1.00[ASN][1000 genomes]
rs72799283	1.00[ASN][1000 genomes]
rs72799301	1.00[ASN][1000 genomes]
rs72800709	1.00[ASN][1000 genomes]
rs72800719	1.00[ASN][1000 genomes]
rs72800725	1.00[ASN][1000 genomes]
rs72800729	1.00[ASN][1000 genomes]
rs72800732	1.00[ASN][1000 genomes]
rs72800738	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72800739	1.00[ASN][1000 genomes]
rs72800741	1.00[ASN][1000 genomes]
rs72800746	1.00[ASN][1000 genomes]
rs72800759	1.00[ASN][1000 genomes]
rs72800765	1.00[ASN][1000 genomes]
rs72800772	1.00[ASN][1000 genomes]
rs72800775	1.00[ASN][1000 genomes]
rs7571660	1.00[ASN][1000 genomes]
rs7586592	1.00[ASN][1000 genomes]
rs998381	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001246	chr2:54195654-54434832	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv1003205	chr2:54220049-54700843	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2762639	chr2:54220049-54700855	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1011790	chr2:54220049-54714553	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1002891	chr2:54227005-54682169	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv535722	chr2:54227005-54682169	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1011690	chr2:54255361-54700843	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv431069	chr2:54260132-54434049	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	esv1851003	chr2:54324701-54372931	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
10	nsv1007731	chr2:54331179-54452329	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
11	nsv535723	chr2:54331179-54452329	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
12	nsv961690	chr2:54339295-54359290	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	nsv1006984	chr2:54343466-54384094	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
14	nsv874148	chr2:54344325-54432222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	nsv1000652	chr2:54345892-54469703	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv1003889	chr2:54347750-54424601	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv582011	chr2:54348704-54384927	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54343400-54351000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:54343400-54353000	Weak transcription	Fetal Lung	lung
3	chr2:54343400-54388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:54343800-54355800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:54348200-54353600	Weak transcription	Brain Substantia Nigra	brain
6	chr2:54348400-54351200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:54348400-54361800	Weak transcription	Brain Anterior Caudate	brain
8	chr2:54348600-54362200	Weak transcription	Liver	Liver
9	chr2:54348600-54365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:54348600-54365800	Weak transcription	Left Ventricle	heart
11	chr2:54348800-54362000	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:54349000-54352400	Enhancers	NHEK	skin
13	chr2:54349000-54352600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:54349200-54366000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr2:54349400-54351000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:54349400-54351000	Enhancers	Fetal Heart	heart
17	chr2:54349400-54360200	Weak transcription	Primary B cells from cord blood	blood
18	chr2:54349800-54351000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:54349800-54351000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr2:54349800-54351200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:54350000-54351000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:54350000-54351000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr2:54350000-54351000	Flanking Active TSS	HMEC	breast
24	chr2:54350000-54351000	Flanking Active TSS	HSMM	muscle
25	chr2:54350000-54365800	Weak transcription	Psoas Muscle	Psoas
26	chr2:54350400-54351000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:54350400-54351000	Flanking Active TSS	HSMMtube	muscle
28	chr2:54350400-54352400	Enhancers	HepG2	liver
29	chr2:54350400-54365800	Weak transcription	Primary T cells from cord blood	blood
30	chr2:54350600-54351000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:54350600-54351000	Flanking Active TSS	Right Atrium	heart
32	chr2:54350600-54351800	Weak transcription	K562	blood
33	chr2:54350600-54352200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr2:54350600-54382600	Weak transcription	Aorta	Aorta
35	chr2:54350800-54351000	Enhancers	Right Ventricle	heart
36	chr2:54350800-54351200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:54350800-54351200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:54350800-54351200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:54350800-54351200	Enhancers	NH-A	brain
40	chr2:54350800-54351200	Enhancers	NHDF-Ad	bronchial
41	chr2:54350800-54351200	Enhancers	Osteobl	bone
42	chr2:54350800-54351800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:54350800-54352200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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