Variant report

Variant	rs72803695
Chromosome Location	chr10:28593981-28593982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28568647..28570429-chr10:28592300..28594787,2	MCF-7	breast:
2	chr10:28592349..28594987-chr10:28608964..28610998,2	MCF-7	breast:
3	chr10:28592763..28594772-chr10:28599041..28600985,2	MCF-7	breast:
4	chr10:28593200..28596095-chr10:28620526..28622698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222374	Chromatin interaction
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1249419	0.88[EUR][1000 genomes]
rs1457177	0.82[AMR][1000 genomes]
rs61843021	0.82[AMR][1000 genomes]
rs61843022	0.82[AMR][1000 genomes]
rs72803660	0.82[AMR][1000 genomes]
rs72803692	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72803693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72805607	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72805623	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28592600-28594000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:28592600-28594200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:28592600-28595800	Weak transcription	Right Ventricle	heart
4	chr10:28592800-28594200	Enhancers	Fetal Intestine Small	intestine
5	chr10:28592800-28595200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:28592800-28606600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:28593000-28594200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:28593000-28607600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:28593200-28594800	Bivalent Enhancer	Primary B cells from cord blood	blood
10	chr10:28593200-28595000	Enhancers	HepG2	liver
11	chr10:28593200-28595800	Weak transcription	Pancreas	Pancrea
12	chr10:28593200-28597400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:28593200-28600200	Weak transcription	Psoas Muscle	Psoas
14	chr10:28593200-28603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:28593200-28605800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:28593400-28594000	Enhancers	Primary T cells from cord blood	blood
18	chr10:28593400-28594400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:28593400-28596400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:28593400-28597400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:28593400-28613400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:28593400-28615200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:28593600-28594000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:28593600-28594000	Weak transcription	Adipose Nuclei	Adipose
25	chr10:28593600-28596000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:28593600-28596000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:28593800-28594200	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links