Variant report

Variant	rs72805623
Chromosome Location	chr10:28615236-28615237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MPP7-1	chr10:28615100-28615353	XLOC_008760

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1148188	0.96[EUR][1000 genomes]
rs1249319	0.94[EUR][1000 genomes]
rs1249329	0.83[EUR][1000 genomes]
rs1249334	0.83[EUR][1000 genomes]
rs1249343	0.83[EUR][1000 genomes]
rs1249345	0.91[EUR][1000 genomes]
rs1249352	0.83[EUR][1000 genomes]
rs1249419	0.85[EUR][1000 genomes]
rs1249500	0.91[EUR][1000 genomes]
rs1262024	0.83[EUR][1000 genomes]
rs703018	0.88[EUR][1000 genomes]
rs72803693	0.83[AFR][1000 genomes]
rs72803695	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72805607	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs915208	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:28596800-28618800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:28601600-28615400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:28604000-28615600	Weak transcription	Primary T cells from cord blood	blood
5	chr10:28607000-28615600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:28609200-28615600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:28609200-28615800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:28611800-28615600	Weak transcription	Pancreas	Pancrea
9	chr10:28614000-28615400	Enhancers	Colon Smooth Muscle	Colon
10	chr10:28614000-28619000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:28614400-28615800	Enhancers	Fetal Muscle Leg	muscle
12	chr10:28614600-28617800	Enhancers	Fetal Stomach	stomach
13	chr10:28614800-28615400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:28614800-28617000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:28614800-28620600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:28615000-28615400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr10:28615000-28615600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:28615000-28616200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:28615000-28617000	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:28615000-28617000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:28615000-28620000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:28615200-28615400	Enhancers	Adipose Nuclei	Adipose
23	chr10:28615200-28615400	Active TSS	Stomach Smooth Muscle	stomach
24	chr10:28615200-28615600	Enhancers	Brain Angular Gyrus	brain
25	chr10:28615200-28615600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:28615200-28615600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:28615200-28615600	Enhancers	Psoas Muscle	Psoas
28	chr10:28615200-28615600	Enhancers	Right Atrium	heart
29	chr10:28615200-28615600	Enhancers	HSMMtube	muscle
30	chr10:28615200-28615800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:28615200-28615800	Bivalent Enhancer	Fetal Brain Male	brain
32	chr10:28615200-28615800	Flanking Active TSS	Fetal Heart	heart
33	chr10:28615200-28616000	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr10:28615200-28616000	Enhancers	Fetal Lung	lung
35	chr10:28615200-28616000	Enhancers	Left Ventricle	heart
36	chr10:28615200-28616000	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr10:28615200-28616200	Enhancers	Fetal Thymus	thymus
38	chr10:28615200-28616200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr10:28615200-28616800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:28615200-28616800	Enhancers	Primary B cells from cord blood	blood
41	chr10:28615200-28616800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:28615200-28616800	Enhancers	Esophagus	oesophagus
43	chr10:28615200-28617000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr10:28615200-28617000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:28615200-28617000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:28615200-28617000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:28615200-28617000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:28615200-28617200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr10:28615200-28617400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:28615200-28619200	Enhancers	Primary T helper cells PMA-I stimulated	--

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