Variant report

Variant	rs72810830
Chromosome Location	chr10:92686595-92686596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92680794..92683229-chr10:92684468..92687238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201604	Chromatin interaction
ENSG00000148677	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10509614	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
2	chr10:92678600-92689400	Weak transcription	Fetal Lung	lung
3	chr10:92681000-92689000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:92681000-92689000	Weak transcription	Lung	lung
5	chr10:92681200-92690800	Weak transcription	Gastric	stomach
6	chr10:92681400-92687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:92681600-92688800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:92681600-92689600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:92681800-92689800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:92682000-92689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:92683000-92687200	Weak transcription	HUVEC	blood vessel
12	chr10:92683000-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:92684800-92688800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:92685000-92688000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:92685000-92688000	Weak transcription	HSMM	muscle
16	chr10:92685000-92689000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:92685000-92689000	Weak transcription	Aorta	Aorta
18	chr10:92685000-92689000	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:92685000-92689000	Weak transcription	Left Ventricle	heart
20	chr10:92685000-92689000	Weak transcription	Psoas Muscle	Psoas
21	chr10:92685000-92689000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:92685200-92689000	Weak transcription	Right Atrium	heart
23	chr10:92685200-92689000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:92685400-92688000	Weak transcription	A549	lung
25	chr10:92685400-92688000	Weak transcription	HSMMtube	muscle
26	chr10:92685800-92688000	Weak transcription	Dnd41	blood
27	chr10:92685800-92688200	Weak transcription	HepG2	liver
28	chr10:92685800-92688400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:92686400-92686600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:92686400-92687000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
31	chr10:92686400-92687800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:92686400-92688000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:92686400-92689400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links