Variant report

Variant	rs10509614
Chromosome Location	chr10:92679687-92679688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92670581..92673630-chr10:92677940..92680636,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11186353	0.82[EUR][1000 genomes]
rs11186356	0.82[EUR][1000 genomes]
rs17102188	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72810830	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
2	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
4	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
5	chr10:92672400-92679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:92672800-92679800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
8	chr10:92674600-92680200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
9	chr10:92675000-92680400	Transcr. at gene 5' and 3'	HSMM	muscle
10	chr10:92675400-92680000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
11	chr10:92675600-92680400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:92675800-92679800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:92676400-92679800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:92676800-92680800	Active TSS	Right Ventricle	heart
15	chr10:92677200-92679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:92677200-92681000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:92677400-92680800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:92677400-92680800	Active TSS	Right Atrium	heart
19	chr10:92678200-92680200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:92678400-92682200	Enhancers	NHDF-Ad	bronchial
21	chr10:92678600-92679800	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:92678600-92679800	Active TSS	NH-A	brain
23	chr10:92678600-92681000	Active TSS	Left Ventricle	heart
24	chr10:92678600-92682800	Weak transcription	Dnd41	blood
25	chr10:92678600-92689400	Weak transcription	Fetal Lung	lung
26	chr10:92678800-92680800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr10:92679000-92680000	ZNF genes & repeats	Fetal Heart	heart
28	chr10:92679000-92681200	Active TSS	HSMMtube	muscle
29	chr10:92679200-92679800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:92679200-92679800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:92679200-92679800	Active TSS	Fetal Muscle Leg	muscle
32	chr10:92679200-92679800	Flanking Active TSS	A549	lung
33	chr10:92679200-92681000	Flanking Active TSS	HepG2	liver
34	chr10:92679200-92681400	Flanking Active TSS	Osteobl	bone
35	chr10:92679400-92679800	Active TSS	Psoas Muscle	Psoas
36	chr10:92679400-92680000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr10:92679400-92680000	Active TSS	Fetal Muscle Trunk	muscle
38	chr10:92679600-92679800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
39	chr10:92679600-92679800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr10:92679600-92680000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr10:92679600-92680200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:92679600-92680400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:92679600-92680400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:92679600-92680800	Enhancers	Hela-S3	cervix
45	chr10:92679600-92681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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