Variant report

Variant	rs11186353
Chromosome Location	chr10:92652850-92652851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92643406..92646204-chr10:92648887..92653001,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509614	0.82[EUR][1000 genomes]
rs10881830	1.00[CEU][hapmap]
rs11186314	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241061	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246189	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261786	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12768638	1.00[CEU][hapmap]
rs17102188	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455083	0.82[EUR][1000 genomes]
rs2027505	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074548	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920627	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955064	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
2	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
4	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
5	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
19	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:92635400-92655200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
24	chr10:92639400-92658600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:92640800-92655200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr10:92640800-92658800	Strong transcription	Dnd41	blood
27	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:92641000-92658600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr10:92641000-92658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:92641600-92654400	Strong transcription	Fetal Brain Female	brain
31	chr10:92641800-92656200	Strong transcription	GM12878-XiMat	blood
32	chr10:92642200-92653400	Strong transcription	Brain Angular Gyrus	brain
33	chr10:92643600-92653600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:92643600-92658400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:92644200-92654000	Strong transcription	Left Ventricle	heart
36	chr10:92644200-92656600	Strong transcription	Primary T cells from cord blood	blood
37	chr10:92644400-92653200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:92644400-92654600	Strong transcription	Fetal Muscle Trunk	muscle
39	chr10:92644400-92655000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr10:92644400-92658400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr10:92645000-92654600	Strong transcription	HepG2	liver
42	chr10:92645000-92661000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr10:92645200-92655200	Strong transcription	Primary B cells from cord blood	blood
44	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:92645400-92658800	Strong transcription	Fetal Intestine Large	intestine
46	chr10:92645600-92653200	Strong transcription	Brain Anterior Caudate	brain
47	chr10:92645600-92656400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr10:92645600-92656800	Strong transcription	Placenta	Placenta
49	chr10:92645800-92655000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:92645800-92663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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