Variant report

Variant	rs17102188
Chromosome Location	chr10:92665783-92665784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92658439..92660667-chr10:92663240..92665926,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10509614	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11186314	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186353	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186356	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241061	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246189	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455083	0.89[EUR][1000 genomes]
rs2027505	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074548	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920627	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955064	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
2	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
3	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
5	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
8	chr10:92648400-92666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
10	chr10:92648600-92667400	Weak transcription	Gastric	stomach
11	chr10:92648600-92668600	Weak transcription	Spleen	Spleen
12	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
17	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:92649600-92669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
20	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:92651600-92671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:92652000-92670200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
24	chr10:92653400-92671600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:92653600-92669400	Weak transcription	K562	blood
26	chr10:92653600-92671600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:92653600-92671800	Weak transcription	HSMMtube	muscle
28	chr10:92653800-92671400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:92654000-92670600	Weak transcription	Ovary	ovary
30	chr10:92654400-92672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:92654600-92670400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:92654800-92668800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:92654800-92671600	Weak transcription	Fetal Kidney	kidney
35	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
36	chr10:92655000-92668400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:92656200-92669600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:92656400-92667200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:92656400-92671400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
41	chr10:92657200-92669000	Weak transcription	Fetal Brain Female	brain
42	chr10:92657200-92671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:92658000-92668000	Strong transcription	HSMM	muscle
44	chr10:92658000-92668200	Strong transcription	Primary T cells from cord blood	blood
45	chr10:92658200-92676800	Weak transcription	NH-A	brain
46	chr10:92658600-92665800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:92658600-92668200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:92658800-92671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:92659400-92667800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:92659600-92671600	Weak transcription	HepG2	liver

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