Variant report

Variant	rs11186356
Chromosome Location	chr10:92663546-92663547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92658439..92660667-chr10:92663240..92665926,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509614	0.82[EUR][1000 genomes]
rs10881830	1.00[CEU][hapmap]
rs11186314	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186353	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241061	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246189	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261786	0.83[EUR][1000 genomes]
rs12768638	1.00[CEU][hapmap]
rs17102188	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455083	0.82[EUR][1000 genomes]
rs2027505	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074548	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920627	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955064	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
3	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
4	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
10	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
12	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:92645800-92663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
16	chr10:92648400-92666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
18	chr10:92648600-92663800	Weak transcription	Lung	lung
19	chr10:92648600-92667400	Weak transcription	Gastric	stomach
20	chr10:92648600-92668600	Weak transcription	Spleen	Spleen
21	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
26	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:92649600-92669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
29	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:92651600-92671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:92652000-92670200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
33	chr10:92653400-92671600	Weak transcription	Brain Angular Gyrus	brain
34	chr10:92653600-92669400	Weak transcription	K562	blood
35	chr10:92653600-92671600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:92653600-92671800	Weak transcription	HSMMtube	muscle
37	chr10:92653800-92671400	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:92654000-92670600	Weak transcription	Ovary	ovary
39	chr10:92654400-92672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:92654600-92670400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:92654800-92668800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:92654800-92671600	Weak transcription	Fetal Kidney	kidney
44	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
45	chr10:92655000-92668400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:92656200-92669600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:92656400-92667200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:92656400-92671400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
50	chr10:92657200-92669000	Weak transcription	Fetal Brain Female	brain

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